Pajek datasets

Protein-protein interaction network in budding yeast

Dataset   Yeast

Description

yeastS.net network with 2361 vertices and 7182 edges (536 loops).
yeastL.net network with 2361 vertices and 7182 edges (536 loops).
yeast.clu partition of vertices.
yeast.paj Pajek project file with complete dataset.

Download

complete dataset (ZIP, 134K)

Background Interaction detection methods have led to the discovery of thousands of interactions between proteins, and discerning relevance within large-scale data sets is important to present-day biology. The dataset consists of protein-protein interaction network described and analyzed in (1) and available as an example in the software package - PIN (2).

PIN class encoding:
1 - T, 2 - M, 3 - U, 4 - C, 5 - F, 6 - P, 7 - G, 8 - D, 9 - O, 10 - E, 11 - R, 12 - B, 13 - A.

yeastS.net X interacts with Y relation, short names.
yeastL.net X interacts with Y relation, long labels.
yeast.clu PIN class partition of vertices, see encoding.
yeast.paj Pajek project file with complete dataset.

References

1. Shiwei Sun, Lunjiang Ling, Nan Zhang, Guojie Li and Runsheng Chen: Topological structure analysis of the protein-protein interaction network in budding yeast. Nucleic Acids Research, 2003, Vol. 31, No. 9 2443-2450 (PDF).
2. Software package Protein Interaction Network PIN